Focused sana: Speeding up network alignment

Ilia Leybovich, Rami Puzis, Roni Stern, Maor Reuben

Proceedings of the International Symposium on Combinatorial Search 9 (1 …, 2018

Network Alignment (NA) is a generalization of the graph isomorphism problem for non-isomorphic graphs, where the goal is to find a node mapping as close as possible to isomorphism. Recent successful NA algorithms follow a search-based approach, such as simulated annealing. We propose to speed up search-based NA algorithms by pruning the search-space based on heuristic rules derived from the topological features of the aligned nodes. We define several desirable properties of such pruning rules, analyze them theoretically, and propose a pruning rule based on nodes’ degrees. Experimental results show that using the proposed rule yields significant speedup and higher alignment quality compared to the state of the art. In addition, we redefine common NA objective functions in terms of established statistical analysis metrics, opening a wide range of possible objective functions.